Andras Fiser: search on Z-Library

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1

Modeling Proteins Using a Super-Secondary Structure Library and NMR Chemical Shift Information

Menon, Vilas, Vallat, Brinda K., Dybas, Joseph M., Fiser, Andras

Journal:

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

2

Photo-assisted peptide enrichment in protein complex cross-linking analysis of a model homodimeric protein using mass spectrometry

Funing Yan, Fa-Yun Che, Edward Nieves, Louis M. Weiss, Ruth H. Angeletti, Andras Fiser

Journal:

Year:

2011

Language:

english

File:

PDF, 289 KB

english, 2011

3

COMPARATIVE PROTEIN STRUCTURE MODELING OF GENES AND GENOMES

Martí-Renom, Marc A., Stuart, Ashley C., Fiser, András, Sánchez, Roberto, Melo, Francisco, Šali, Andrej

Journal:

Annual Review of Biophysics and Biomolecular Structure

Year:

2000

Language:

english

File:

PDF, 352 KB

english, 2000

4

Discovery of Receptor‐Ligand Interfaces in the Immunoglobulin Superfamily

Gil, Nelson, Fajardo, Eduardo J., Fiser, Andras

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

Language:

english

File:

PDF, 638 KB

english, 2019

5

EPIC-DB: a proteomics database for studying Apicomplexan organisms

Carlos J Madrid-Aliste, Joseph M Dybas, Ruth Hogue Angeletti, Louis M Weiss, Kami Kim, Istvan Simon, Andras Fiser

Journal:

Year:

2009

Language:

english

File:

PDF, 616 KB

english, 2009

6

Structural genomics is the largest contributor of novel structural leverage

Rajesh Nair, Jinfeng Liu, Ta-Tsen Soong, Thomas B. Acton, John K. Everett, Andrei Kouranov, Andras Fiser, Adam Godzik, Lukasz Jaroszewski, Christine Orengo, Gaetano T. Montelione, Burkhard Rost

Journal:

Journal of Structural and Functional Genomics

Year:

2009

Language:

english

File:

PDF, 489 KB

english, 2009

7

2-(m-Azidobenzoyl)taxol binds differentially to distinct β-tubulin isotypes

Yang, Chia-Ping Huang, Yap, Eng-Hui, Xiao, Hui, Fiser, Andras, Horwitz, Susan Band

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 899 KB

english, 2016

8

Residues in the eighth transmembrane domain of the proton-coupled folate transporter (SLC46A1) play an important role in defining the aqueous translocation pathway and in folate substrate binding

Aluri, Srinivas, Zhao, Rongbao, Fiser, Andras, Goldman, I. David

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2017

Language:

english

File:

PDF, 1.44 MB

english, 2017

9

Computational Redesign of PD-1 Interface for PD-L1 Ligand Selectivity

Shrestha, Rojan, Garrett, Sarah C., Almo, Steven C., Fiser, Andras

Journal:

Year:

2019

Language:

english

File:

PDF, 2.38 MB

english, 2019

10

Transactivation of Abl by the Crk II adapter protein requires a PNAY sequence in the Crk C-terminal SH3 domain

Reichman, Charles, Singh, Kamalendra, Liu, Yan, Singh, Sukhwinder, Li, Hong, Fajardo, J Eduardo, Fiser, Andras, Birge, Raymond B

Journal:

Year:

2005

Language:

english

File:

PDF, 414 KB

english, 2005

11

Paper alert

Máire Convery, Caitrı́ona Dennis, Siân Rowsell, Tanja Kortemme, Ora Furman-Schueler, William J Wedemeyer, Andras Fiser, Gary Parkinson, Richard Copley, Gianfranco Gilardi, Irmgard Sinning, Richard New

Journal:

Current Opinion in Structural Biology

Year:

2002

Language:

english

File:

PDF, 65 KB

english, 2002

12

Different sequence environments of amino acid residues involved and not involved in long-range interactions in proteins

ÉVA TÜDÖS, ANDRÁS FISER, ISTVAN SIMON

Journal:

Chemical Biology & Drug Design

Year:

1994

Language:

english

File:

PDF, 343 KB

english, 1994

13

Functional Clustering of Immunoglobulin Superfamily Proteins with Protein–Protein Interaction Information Calibrated Hidden Markov Model Sequence Profiles

Yap, Eng-Hui, Rosche, Tyler, Almo, Steve, Fiser, Andras

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

14

Post-Translational Modifications to Toxoplasma gondii α- and β-Tubulins Include Novel C-Terminal Methylation

Xiao, Hui, El Bissati, Kamal, Verdier-Pinard, Pascal, Burd, Berta, Zhang, Hongshan, Kim, Kami, Fiser, Andras, Angeletti, Ruth Hogue, Weiss, Louis M.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 4.51 MB

english, 2010

15

Probing the specificity of a trypanosomal aromatic α-hydroxy acid dehydrogenase by site-directed mutagenesis

Javier Vernal, András Fiser, Andrej Šali, Miklós Müller, Juan José Cazzulo, Cristina Nowicki

Journal:

Biochemical and Biophysical Research Communications

Year:

2002

Language:

english

File:

PDF, 230 KB

english, 2002

16

Functional Classification of Immune Regulatory Proteins

Rubinstein, Rotem, Ramagopal, Udupi A., Nathenson, Stanley G., Almo, Steven C., Fiser, Andras

Journal:

Year:

2013

Language:

english

File:

PDF, 1.26 MB

english, 2013

17

Impairment of a model peptide by oxidative stress: Thermodynamic stabilities of asparagine diamide Cα-radical foldamers

Gerlei, Klára Z., Élő, Lilla, Fiser, Béla, Owen, Michael C., Jákli, Imre, Knak Jensen, Svend J., Csizmadia, Imre G., Perczel, András, Viskolcz, Béla

Journal:

Chemical Physics Letters

Year:

2014

Language:

english

File:

PDF, 714 KB

english, 2014

18

A Pharmacophore Approach for Protein Interface Design

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 44 KB

english, 2018

19

Structural biology

Máire Convery, Caitrı́ona Dennis, Siân Rowsell, Tanja Kortemme, Sehat Nauli, Alex Watters, Andras Fiser, Gary Parkinson, Richard Copley, Gianfranco Gilardi, Richard Newman, Irmgard Sinning, Sabine L F

Journal:

Current Opinion in Structural Biology

Year:

2001

Language:

english

File:

PDF, 61 KB

english, 2001

20

Structural biology

Máire Convery, Vanita D Sood, Tanja Kortemme, Andras Fiser, Gary Parkinson, Richard Copley, Gianfranco Gilardi, Richard Newman, Irmgard Sinning, Airlie McCoy, Tim Dafforn, Adriana E Miele, Jon D Stewa

Journal:

Current Opinion in Structural Biology

Year:

2002

Language:

english

File:

PDF, 56 KB

english, 2002

21

Nonprotein Based Enrichment Method to Analyze Peptide Cross-Linking in Protein Complexes

Yan, Funing, Che, Fa-Yun, Rykunov, Dmitry, Nieves, Edward, Fiser, Andras, Weiss, Louis M., Hogue Angeletti, Ruth

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 2.25 MB

english, 2009

22

Control of mitochondrial function and cell growth by the atypical cadherin Fat1

Cao, Longyue L., Riascos-Bernal, Dario F., Chinnasamy, Prameladevi, Dunaway, Charlene M., Hou, Rong, Pujato, Mario A., O’Rourke, Brian P., Miskolci, Veronika, Guo, Liang, Hodgson, Louis, Fiser, Andras

Journal:

Year:

2016

Language:

english

File:

PDF, 13.52 MB

english, 2016

23

Altered Subunit Communication in Subfamilies of Trimeric dUTPases

András Fiser, Beáta G Vértessy

Journal:

Biochemical and Biophysical Research Communications

Year:

2000

Language:

english

File:

PDF, 756 KB

english, 2000

24

Modeling mutations in protein structures

Eric Feyfant, Andrej Sali, András Fiser

Journal:

Protein Science

Year:

2007

Language:

english

File:

PDF, 716 KB

english, 2007

25

The role of long-range interactions in defining the secondary structure of proteins is overestimated

Fiser, András, Dosztányi, Zsuzsanna, Simon, István

Journal:

Year:

1997

Language:

english

File:

PDF, 419 KB

english, 1997

26

Toxoplasma gondii proteomics

Weiss, Louis M, Fiser, Andras, Angeletti, Ruth Hogue, Kim, Kami

Journal:

Expert Review of Proteomics

Year:

2009

Language:

english

File:

PDF, 277 KB

english, 2009

27

Reply to Moult et al.

Andrej Sali, Marc A Marti-Renom, M.S Madhusudhan, András Fiser, Burkhard Rost

Journal:

Year:

2002

Language:

english

File:

PDF, 28 KB

english, 2002

28

Structural biology

Máire Convery, Caitrı́ona Dennis, Siân Rowsell, Tanja Kortemme, Ora Furman-Schueler, William J Wedemeyer, Andreas Engel, Andras Fiser, Gary Parkinson, Richard Copley, Irmgard Sinning, Richard Newman,

Journal:

Current Opinion in Structural Biology

Year:

2002

Language:

english

File:

PDF, 51 KB

english, 2002

29

Crystal structure of human Karyopherin β2 bound to the PY-NLS ofSaccharomyces cerevisiaeNab2

Soniat, Michael, Sampathkumar, Parthasarathy, Collett, Garen, Gizzi, Anthony S., Banu, Radhika N., Bhosle, Rahul C., Chamala, Swetha, Chowdhury, Sukanya, Fiser, Andras, Glenn, Alan S., Hammonds, James

Journal:

Journal of Structural and Functional Genomics

Year:

2013

Language:

english

File:

PDF, 489 KB

english, 2013

30

A word of caution about biological inference – Revisiting cysteine covalent state predictions

Tüdős, Éva, Mészáros, Bálint, Fiser, András, Simon, István

Journal:

Year:

2014

Language:

english

File:

PDF, 422 KB

english, 2014

31

Development of a motif-based topology-independent structure comparison method to identify evolutionarily related folds

Dybas, Joseph M., Fiser, Andras

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 733 KB

english, 2016

32

Identifying functionally informative evolutionary sequence profiles

Gil, Nelson, Fiser, Andras

Journal:

Year:

2017

Language:

english

File:

PDF, 289 KB

english, 2017

33

Redesigning HVEM Interface for Selective Binding to LIGHT, BTLA, and CD160

Shrestha, Rojan, Garrett-Thomson, Sarah C., Liu, Weifeng, Almo, Steven C., Fiser, Andras

Journal:

Year:

2020

File:

PDF, 2.67 MB

2020

34

Modeling of loops in protein structures

András Fiser, Richard Kinh Gian Do, Andrej Šali

Journal:

Protein Science

Year:

2000

Language:

english

File:

PDF, 4.30 MB

english, 2000

35

Frozen tissue can provide reproducible proteomic results of subcellular fractionation

Jihyeon Lim, Vilas Menon, Markus Bitzer, Leah M. Miller, Carlos Madrid-Aliste, Louis M. Weiss, Andras Fiser, Ruth H. Angeletti

Journal:

Analytical Biochemistry

Year:

2011

Language:

english

File:

PDF, 975 KB

english, 2011

36

Reliability of Assessment of Protein Structure Prediction Methods

Marc A Marti-Renom, M.S Madhusudhan, András Fiser, Burkhard Rost, Andrej Sali

Journal:

Year:

2002

Language:

english

File:

PDF, 335 KB

english, 2002

37

New statistical potential for quality assessment of protein models and a survey of energy functions

Dmitry Rykunov, Andras Fiser

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 576 KB

english, 2010

38

Structural biology

Máire Convery, Caitrı́ona Dennis, Siân Rowsell, Tanja Kortemme, Ora Schueler-Furman, William J Wedemeyer, Andreas Engel, Andras Fiser, Gary Parkinson, Richard Copley, Gianfranco Gilardi, Richard Newma

Journal:

Current Opinion in Structural Biology

Year:

2001

Language:

english

File:

PDF, 65 KB

english, 2001

39

TMIC-40. YKL-40 AS MODULATOR OF CANCER STEM CELL PHENOTYPIC TRANSITIONS IN HUMAN GLIOBLASTOMAS

Guetta-Terrier, Charlotte, Akosman, Bedia, Kamle, Suchitra, Fajardo, Eduardo, Fiser, Andras, Lee, Chun G, Toms, Steven A, Elias, Jack A, Tapinos, Nikos

Journal:

Year:

2019

File:

PDF, 90 KB

2019

40

Structural Biology

Máire Convery, Caitrı́ona Dennis, Siân Rowsell, Tanja Kortemme, Christopher T Saunders, Vanita D Sood, Andreas Engel, Andras Fiser, Gary Parkinson, Richard Copley, Irmgard Sinning, Sabine L Flitsch, A

Journal:

Current Opinion in Structural Biology

Year:

2002

Language:

english

File:

PDF, 67 KB

english, 2002

41

Cell wall branches, penicillin resistance and the secrets of the MurM protein

András Fiser, Sergio R. Filipe, Alexander Tomasz

Journal:

Trends in Microbiology

Year:

2003

Language:

english

File:

PDF, 3.50 MB

english, 2003

42

Identification of an Extracellular Gate for the Proton-Coupled Folate Transporter (SLC46A1) by Cysteine Cross-Linking

Zhao, Rongbao, Najmi, Mitra, Fiser, Andras, Goldman, I. David

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 776 KB

english, 2016

43

Substitutions that lock and unlock the proton-coupled folate transporter (PCFT-SLC46A1) in an inward-open conformation

Aluri, Srinivas, Zhao, Rongbao, Lin, Kai, Shin, Daniel Sanghoon, Fiser, Andras, Goldman, I. David

Journal:

Journal of Biological Chemistry

Year:

2019

File:

PDF, 4.17 MB

2019

44

Multiple mapping method: A novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling

Brajesh K. Rai, András Fiser

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 689 KB

english, 2006

45

Protein structure based prediction of catalytic residues

J Eduardo Fajardo, Andras Fiser

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 449 KB

english, 2013

46

Letter to the Editor: 1H, 13C, 15N resonance assignments and fold verification of a circular permuted variant of the potent HIV-inactivating protein cyanovirin-N*

Laura G. Barrientos, Ramón Campos-Olivas, John M. Louis, András Fiser, Andrej Šali, Angela M. Gronenborn

Journal:

Journal of Biomolecular NMR

Year:

2001

Language:

english

File:

PDF, 35 KB

english, 2001

47

Paper alert: Structural biology

Máire Convery, Caitrı́ona Dennis, Siân Rowsell, Tanja Kortemme, Ora Schueler-Furman, Alex Watters, Andreas Engel, Andras Fiser, Gary Parkinson, Richard Copley, Gianfranco Gilardi, Richard Newman, Irmg

Journal:

Current Opinion in Structural Biology

Year:

2001

Language:

english

File:

PDF, 94 KB

english, 2001

48

Protein—protein binding supersites

Viswanathan, Raji, Fajardo, Eduardo, Steinberg, Gabriel, Haller, Matthew, Fiser, Andras, Schlessinger, Avner

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.65 MB

english, 2019

49

Hereditary folate malabsorption due to a mutation in the external gate of the proton-coupled folate transporter SLC46A1

Aluri, Srinivas, Zhao, Rongbao, Lubout, Charlotte, Goorden, Susanna M. I., Fiser, Andras, Goldman, I. David

Journal:

Year:

2018

File:

PDF, 1.28 MB

2018

50

Acetylsalicylic acid (aspirin) reduces damage to reconstituted human tissues infected with Candida species by inhibiting extracellular fungal lipases

David Trofa, Mariangela Agovino, Frank Stehr, Wilhelm Schäfer, Dmitry Rykunov, András Fiser, Zsuzsanna Hamari, Joshua D. Nosanchuk, Attila Gácser

Journal:

Microbes and Infection

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

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